PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00975g01012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25062.1 Da    PI: 6.5325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00975g01012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.8e-191859142
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              k+i+n+  r+vtfskRr g++KKA+EL++L +ae+a+i+ s 
  Peinf101Scf00975g01012.1 18 KPIDNENSRHVTFSKRRFGLFKKASELCILSGAEIAIIVQSL 59
                              68*************************************885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.6891058IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-241070IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-2311100IPR002100Transcription factor, MADS-box
CDDcd002655.94E-311186No hitNo description
PRINTSPR004048.4E-131232IPR002100Transcription factor, MADS-box
PfamPF003193.4E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-133247IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-134768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNVNTVKKTQ GRRKIAIKPI DNENSRHVTF SKRRFGLFKK ASELCILSGA EIAIIVQSLK  60
RRRLFAFGHP SVDAVIDRYV NGKSSSTRAD QSNNVQQNNQ YYSKICRELE EEKKKRKEEE  120
VIEETKILND GGFWWDKPTD DMGIEELEGF MTALEELKKN VTMRADELSM INGSSVHASS  180
SNSTRFGVED QYLNQAMDYY ASNVPFDFDH QVGDEGQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-106PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4B2N71e-106K4B2N7_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31AGAMOUS-like 62